JBioFramework (JBF) is a set of two different chemical separations simulations (2D Electrophoresis and Mass Spectrometry) that are frequently used in chemistry, biochemistry and proteomics research. It is written in the Java programming language and will run on any and all systems that have the JVM installed.
As we continue to develop the software over the coming months/years and attempt to quantify the success of our efforts with testing and reviews, user input is very important. Please don't hesitate to review the software below or email Paul Craig pac8612@rit.edu with larger descriptions/bugs/feature ideas.
Our next scheduled release will contain (in addition to 2DE and MassSpec) a 1D Electrophoresis simulation as well as a tab containing ChemAxon's MarvinSketch http://www.chemaxon.com/products/marvin/ along with some improved functionality. It should be out shortly as we complete the creation and modification of a permanent domain for the project.
Latest 5 files |
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| Nombre | Tamaño | Fecha | Download count |
| JBioFramework.zip | 105.2 MB | 2016-08-10 07:53 | 3 |
| E2D Tandem MS.zip | 15.1 MB | 2012-07-12 06:58 | 46 |
| JBioFramework.zip | 11.6 MB | 2012-03-09 04:33 | 14 |
| Sort Web Page Frame.PNG | 10.4 KB | 2010-11-16 06:41 | 6 |
| Search Proteins Frame.PNG | 11.0 KB | 2010-11-16 06:40 | 4 |
Todos los Ficheros |
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| JBioFramework.zip | 105.2 MB | 2016-08-10 07:53 | 3 |
| E2D Tandem MS.zip | 15.1 MB | 2012-07-12 06:58 | 46 |
| JBioFramework.zip | 11.6 MB | 2012-03-09 04:33 | 14 |
| Sort Web Page Frame.PNG | 10.4 KB | 2010-11-16 06:41 | 6 |
| Search Proteins Frame.PNG | 11.0 KB | 2010-11-16 06:40 | 4 |
| Search Protein Field Button.PNG | 1.2 KB | 2010-11-16 06:39 | 9 |
| Record to CSV Button.PNG | 1.1 KB | 2010-11-16 06:39 | 3 |
| Protein Lists Frame.PNG | 23.1 KB | 2010-11-16 06:38 | 5 |
| Protein Information Frame.PNG | 14.0 KB | 2010-11-16 06:38 | 4 |
| pH Ranges Displayed.PNG | 3.1 KB | 2010-11-16 06:37 | 5 |
| main.png | 106.7 KB | 2010-11-16 06:37 | 1 |
| main.JPG | 114.6 KB | 2010-11-16 06:37 | 1 |
| Load Protein Frame.PNG | 16.8 KB | 2010-11-16 06:37 | 2 |
| IEF Animation Running.PNG | 3.1 KB | 2010-11-16 06:37 | 22 |
| HTML Page Example.PNG | 35.0 KB | 2010-11-16 06:36 | 0 |
| Generate HTML Page Button.PNG | 1.3 KB | 2010-11-16 06:36 | 4 |
| Enter Range Step 2.PNG | 1.2 KB | 2010-11-16 06:36 | 5 |
| Enter Range Step 1.PNG | 2.3 KB | 2010-11-16 06:36 | 0 |
| Display Protein List Button.PNG | 1.3 KB | 2010-11-16 06:36 | 1 |
| Compare Proteins Button.PNG | 1.3 KB | 2010-11-16 06:35 | 0 |
| Color Key Frame.PNG | 9.4 KB | 2010-11-16 06:35 | 1 |
| Color Key Button.PNG | 0.8 KB | 2010-11-16 06:35 | 1 |
| Choose PH.PNG | 1.2 KB | 2010-11-16 06:35 | 0 |
| Choose Acrylamide.PNG | 1.5 KB | 2010-11-16 06:35 | 3 |
| Animation Chooser SDS.PNG | 3.3 KB | 2010-11-16 06:34 | 4 |
| Animation Chooser IEF.PNG | 4.3 KB | 2010-11-16 06:34 | 6 |
| Add Proteins Button.PNG | 1.1 KB | 2010-11-16 06:34 | 5 |
| Separation_conditions.htm | 1.4 KB | 2010-11-16 06:34 | 0 |
| Search_Proteins.htm | 1.2 KB | 2010-11-16 06:33 | 2 |
| SDS_PAGE.htm | 1.0 KB | 2010-11-16 06:33 | 5 |
| Record_to_CSV.htm | 1.0 KB | 2010-11-16 06:33 | 2 |
| master.js | 0.5 KB | 2010-11-16 05:59 | 16 |
| Loading_files.htm | 1.0 KB | 2010-11-16 05:59 | 4 |
| Isoelectric_focusing.htm | 1.1 KB | 2010-11-16 05:58 | 1 |
| htmlhelp.css | 1.4 KB | 2010-11-16 05:58 | 16 |
| help.html | 0.3 KB | 2010-11-16 05:58 | 4 |
| Generate_HTML.htm | 1.7 KB | 2010-11-16 05:58 | 6 |
| FirstTopic.htm | 3.4 KB | 2010-11-16 05:58 | 2 |
| Exploring_the_Separation.htm | 1.0 KB | 2010-11-16 05:58 | 3 |
| E2DhelpWebTOC.html | 6.7 KB | 2010-11-16 05:57 | 0 |
| E2DhelpWebIndex.html | 0.3 KB | 2010-11-16 05:57 | 2 |
| Display_Protein_List.htm | 1.2 KB | 2010-11-16 05:57 | 2 |
| Compare_Proteins.htm | 0.8 KB | 2010-11-16 05:57 | 0 |
| Animation_Select.htm | 0.9 KB | 2010-11-16 05:57 | 0 |
| Adding_proteins.htm | 1.0 KB | 2010-11-16 05:57 | 1 |
| about.html | 0.6 KB | 2010-11-16 05:56 | 2 |
| pseudomonas_putida_gbk.e2d | 3.4 MB | 2010-11-16 05:56 | 3 |
| pseudomonas_putida_faa.e2d | 3.6 MB | 2010-11-16 05:54 | 2 |
| pseudomonas_putida.gbk | 12.8 MB | 2010-11-16 05:52 | 1 |
| pseudomonas_putida.faa | 2.3 MB | 2010-11-16 05:47 | 0 |
| e_coliK12_gbk.e2d | 2.9 MB | 2010-11-16 05:47 | 2 |
| e_coliK12_faa.e2d | 2.7 MB | 2010-11-16 05:46 | 0 |
| e_coliK12.gbk | 10.8 MB | 2010-11-16 05:45 | 3 |
| e_coliK12.faa | 1.7 MB | 2010-11-16 05:38 | 1 |
| JBioFramework.jar | 42.7 MB | 2010-11-16 05:36 | 2 |
| JBF Source Package.zip | 13.0 MB | 2009-09-08 08:07 | 19 |
| RIT_JBF.zip | 13.1 MB | 2008-12-16 04:20 | 9 |
| AddProteinButton.java | 3.3 KB | 2008-12-13 11:23 | 0 |
